Irresistibly Soft Apple Cider Whoopie Pies : A Must-Try Fall Dessert

Posted on July 28, 2025 ·

By Lyndy

an image of apple cider whoopie pies stacked on top of each other

Fall is the season of crisp air, cozy sweaters, and indulgent treats that capture the essence of the season. Among the most charming fall desserts are these Apple Cider Whoopie Pies—pillowy soft cookie sandwiches bursting with spiced apple cider flavor and filled with luscious cream. Whether you’re looking to bake something new for Thanksgiving, a cozy weekend treat, or a sweet surprise for a fall gathering, this Apple Cider Whoopie Pie recipe will quickly become a seasonal staple in your kitchen.

Perfectly spiced and delightfully nostalgic, these little handheld pies combine the best of cookies, pies, and cream-filled desserts. If you’re a fan of fall pies and cozy autumn pie recipes, you’re going to fall in love with these whoopie pies from the very first bite.

Why You’ll Love This Apple Cider Whoopie Pie Recipe

This recipe brings together the warm and aromatic notes of reduced apple cider, cinnamon, nutmeg, and cloves—all nestled in a tender cookie sandwich. It’s a celebration of fall in every bite.

These Apple Cider Whoopie Pies aren’t just delicious—they’re also versatile. They’re perfect for a Thanksgiving dessert tray, school bake sales, or cozy nights at home with a mug of tea or hot cider. And if you’re exploring more seasonal inspiration, pair them with our comforting Pumpkin Maple Blondies or ultra-festive Pumpkin Cheesecake Cookies.

Ingredients for Apple Cider Whoopie Pies

These ingredients make about 12-14 whoopie pies (24-28 cookies).

For the Apple Cider Cookies:

  • 2 cups apple cider (to be reduced to 1/2 cup)
  • 2 1/4 cups all-purpose flour (270g)
  • 1/2 teaspoon baking soda
  • 1 teaspoon baking powder
  • 1/2 teaspoon salt
  • 1 teaspoon cinnamon
  • 1/4 teaspoon nutmeg
  • 1/4 teaspoon ground cloves
  • 1/2 cup unsalted butter, softened (113g)
  • 1/2 cup brown sugar (100g)
  • 1/2 cup granulated sugar (100g)
  • 2 large eggs
  • 1 teaspoon vanilla extract

For the Cinnamon Cream Cheese Filling:

  • 4 oz cream cheese, softened (113g)
  • 1/4 cup unsalted butter, softened (57g)
  • 1 teaspoon vanilla extract
  • 1/2 teaspoon cinnamon
  • 2 cups powdered sugar (240g)

Looking for more cream pie cookie recipes? You’ll love our fluffy Vanilla Bean Brown Butter Cheesecake and dreamy Raspberry Cream Cheese Bites.

Step-by-Step Instructions for Making Apple Cider Whoopie Pies

  1. Reduce the Apple Cider:
    In a small saucepan, simmer 2 cups of apple cider over medium heat until it reduces to about 1/2 cup. This intensifies the apple flavor. Let it cool.
  2. Prepare the Dry Ingredients:
    In a medium bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, nutmeg, and cloves.
  3. Cream the Butter and Sugars:
    In a large mixing bowl, beat the butter, granulated sugar, and brown sugar until light and fluffy (about 2–3 minutes).
  4. Add Eggs and Vanilla:
    Beat in the eggs one at a time, then add vanilla extract and the cooled reduced apple cider.
  5. Combine Wet and Dry Ingredients:
    Gradually mix the dry ingredients into the wet mixture until fully combined.
  6. Scoop and Bake:
    Preheat the oven to 350°F (175°C). Scoop 1 to 1.5 tablespoon portions of dough onto a parchment-lined baking sheet, leaving room to spread. Bake for 10–12 minutes or until the edges are set. Cool completely.
  7. Make the Filling:
    Beat the cream cheese and butter until smooth. Add vanilla and cinnamon, then gradually mix in powdered sugar until light and fluffy.
  8. Assemble the Whoopie Pies:
    Pipe or spoon the filling onto the flat side of half the cookies. Top with another cookie to create a sandwich.

For a savory fall pairing, serve these pies alongside something hearty like Ground Turkey Butternut Squash Skillet or a light Cucumber Dill Salad for contrast.

Essential Tools for This Fall Whoopie Pie Recipe

  • Mixing bowls (small, medium, and large)
  • Hand mixer or stand mixer
  • Saucepan for reducing cider
  • Measuring cups and spoons
  • Cookie scoop or spoon
  • Parchment paper
  • Baking sheets
  • Wire rack for cooling
  • Piping bag or zip-top bag for filling

You’ll use many of these tools again when making fall favorites like Pumpkin French Toast Roll-Ups or Pumpkin Oatmeal Cream Pies.

Tips for the Best Apple Cider Whopper Pies

  • Use fresh apple cider for the richest flavor. Avoid apple juice.
  • Don’t skip reducing the cider—it concentrates the flavor and ensures the dough doesn’t get too wet.
  • Cool completely before assembling to prevent the cream from melting.
  • Refrigerate the filling slightly if it’s too soft to pipe.
  • Use a cookie scoop for uniform shapes.

Just like our Pumpkin Dump Cake, this recipe is easy to prep ahead and full of crowd-pleasing flavor.

Variations and Creative Twists on Apple Cider Whoopie Pies

Feeling creative? Try these fun spins:

  • Caramel Apple Version: Add a drizzle of caramel to the cream filling.
  • Maple Cinnamon Filling: Replace some powdered sugar with maple syrup and increase the cinnamon.
  • Mini Whoopie Pies: Use a smaller scoop for bite-sized treats.
  • Pumpkin Apple Cider Pies: Mix in a bit of pumpkin puree with the apple cider for a cozy combo.

For more autumn indulgence, check out this Pumpkin Spice Bundt Cake—an impressive dessert perfect for any fall gathering.

Even simple recipes have their pitfalls. Here’s what to watch out for:

  • Overbaking the cookies: They should be soft and cake-like, not crisp.
  • Using uncooled cider: Hot cider will melt your batter and make it too loose.
  • Skipping the chill: A slightly firm filling is easier to work with.
  • Too much filling: While tempting, it can cause the cookies to slide.

Much like with Cheesecake Stuffed Cookies, balance is key!

Serving and Presentation Ideas for Fall Pies Thanksgiving Desserts

Make your Apple Cider Whoopie Pies even more appealing:

  • Dust with powdered sugar or cinnamon for a finishing touch.
  • Wrap individually in parchment or cellophane for easy gifting.
  • Serve on a rustic wood board with mini pumpkins or cinnamon sticks for décor.

These would look right at home next to Halloween Cookies or Pumpkin Poke Cake on your dessert table.

How to Store and Freeze Apple Cider Whoopie Pies

Room Temperature: Store in an airtight container for up to 2 days if cool and dry.

Refrigerator: Best for 3–5 days. Let them sit out 10 minutes before eating.

Freezer: Freeze assembled pies in a single layer, then transfer to a container. Thaw overnight in the fridge.

You can also freeze the cookies and filling separately, just like you would for Air Fryer Churro Bites.

Perfect Food and Drink Pairings for Fall Foods and Desserts

Pair these cookies with cozy fall drinks and snacks:

  • Hot spiced cider or cinnamon tea
  • Pumpkin-flavored lattes
  • Sweet Potato Toast topped with apple butter
  • Creamy Pumpkin Gnocchi for a sweet-savory fall dinner

If you’re preparing a full fall menu, consider adding Cinnamon Apple Bread for breakfast or Cream Cheese Pumpkin Bread as a side.

FAQs About Apple Cider Whoopie Pies

Can I make these ahead of time?
Yes! You can make both the cookies and filling a day in advance and assemble before serving.

Do they need to be refrigerated?
Because of the cream cheese filling, they should be stored in the fridge if not eaten the same day.

Can I freeze the dough?
Yes, scoop the dough onto a tray and freeze. Bake from frozen, adding 1–2 extra minutes.

Can I use store-bought frosting?
You can, but homemade cinnamon cream cheese filling tastes best.

Final Thoughts on These Autumn Pie Recipes

There’s no better way to celebrate the coziness of fall than with these incredibly soft and flavorful Apple Cider Whoopie Pies. From their gently spiced cookie layers to the creamy center, every bite tastes like autumn. They’re easy enough for beginners but impressive enough for holiday dessert spreads, making them a top pick for fall pies Thanksgiving menus and fall foods and desserts.

So grab your apple cider, gather your ingredients, and treat yourself (and your loved ones) to one of the best fall whoopie pie recipes you’ll ever bake.

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Irresistibly Soft Apple Cider Whoopie Pies : A Must-Try Fall Dessert


  • Author: Lyndy
  • Total Time: 1 hour
  • Yield: 1214 whoopie pies 1x
  • Diet: Vegetarian

Description

These Cozy Apple Cider Whoopie Pies are the ultimate fall dessert! Soft, spiced cakes filled with rich apple cider flavor are sandwiched around a creamy cream cheese filling. Perfect for Thanksgiving dessert trays, cozy weekends, or festive fall gatherings.


Ingredients

Scale
  • For the Apple Cider Cakes:
  • 1 ½ cups (360ml) apple cider (to be reduced)
  • 2 ½ cups (315g) all-purpose flour
  • 1 teaspoon baking soda
  • 1 teaspoon baking powder
  • ½ teaspoon salt
  • 1 ½ teaspoons cinnamon
  • ¼ teaspoon ground nutmeg
  • ¼ teaspoon ground cloves
  • ¾ cup (150g) brown sugar, packed
  • ½ cup (100g) granulated sugar
  • ½ cup (113g) unsalted butter, room temperature
  • 1/3 cup (80ml) vegetable oil
  • 2 large eggs
  • 1 teaspoon vanilla extract
  • ½ cup (120ml) buttermilk
  • For the Cream Cheese Filling:
  • ½ cup (113g) unsalted butter, room temperature
  • 8 oz (226g) cream cheese, softened
  • 2 ½ cups (300g) powdered sugar
  • ½ teaspoon vanilla extract

Instructions

  1. In a saucepan, simmer apple cider over medium heat until reduced to about ½ cup. Cool completely.
  2. In a large bowl, whisk together flour, baking soda, baking powder, salt, cinnamon, nutmeg, and cloves.
  3. In another bowl, cream butter, oil, brown sugar, and granulated sugar until fluffy. Add eggs, then vanilla, and cooled cider reduction.
  4. Gradually add dry ingredients to wet mixture, alternating with buttermilk. Mix until just combined.
  5. Preheat oven to 350°F (177°C). Line baking sheets with parchment. Scoop batter onto sheets, spacing evenly. Bake 10–12 minutes until set. Cool completely.
  6. Beat cream cheese and butter until smooth. Add powdered sugar and vanilla; beat until fluffy.
  7. Pipe or spoon filling onto flat sides of half the cakes. Top with remaining cakes to form sandwiches.

Notes

  • Reduce the cider fully for maximum flavor impact.
  • Do not overmix the batter—mix just until combined.
  • Let the cakes cool completely before assembling.
  • Store pies in an airtight container; refrigerate or freeze for longer storage.
  • Try variations like apple cider glaze or caramel filling for a twist.
  • Prep Time: 25 minutes
  • Cook Time: 12 minutes
  • Category: Dessert
  • Method: Baking
  • Cuisine: American

Nutrition

  • Serving Size: 1 whoopie pie
  • Calories: 290
  • Sugar: 24g
  • Sodium: 160mg
  • Fat: 14g
  • Saturated Fat: 8g
  • Unsaturated Fat: 5g
  • Trans Fat: 0g
  • Carbohydrates: 38g
  • Fiber: 1g
  • Protein: 3g
  • Cholesterol: 45mg

Keywords: Apple Cider Whoopie Pies, Fall Whoopie Pie Recipe, Cream Pie Cookie Recipes, Autumn Desserts, Thanksgiving Whoopie Pies

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